Untertitel Calculating tree likelihoods, How to find the ML tree, Finding the best tree, Tree rearrangements in RAxML, Optimizing branch lengths, Likelihood cutoff heuristics, How stable is my tree?, Resampling methods, Rapid bootstrapping in RAxML, Modeling rate...
Sprecher Prof. Dr. Ingo Ebersberger
Ort Biologicum - Bio - 1.302 Seminarraum 3
Datum 16.07.2019 @ 11:00
Beschreibung ..., Looking at trees via their splits: Consensus Trees
Gillespie Algorithmen
Sprecher Prof. Dr. Ingo Ebersberger
Ort Biologicum - Bio -1.203 (Hörsaal 2)
Datum 04.07.2019 @ 09:21
Beschreibung Rate matrix, event rates, site specific rates, phylogenetic trees, likelihood function
Models (continued)
Untertitel Posterior state probabilities, Forward-Algorithmus, Profil Hidden Markov Modelle, PLAN7 pHMMs, Modellierung biologischer Sequenzen, Problem begrenzter Trainingsdaten, Dirichlet-Dichten / -Verteilungen, Wofür stehen die 9 Komponenten?
Sprecher Prof. Dr. Ingo Ebersberger
Ort Biologicum - Bio - 1.302 Seminarraum 3
Datum 02.07.2019 @ 11:00
Viterbi-Algorithmus / PSSMs
Sprecher Prof. Dr. Ingo Ebersberger
Ort Biologicum - Bio - 1.201 Seminarraum 1
Datum 13.06.2019 @ 10:10
Beschreibung Part II:
Pseudocounts, HMM, Zustandspfad
Consistency based alignment strategies (T-COFFEE) / PSSM
Sprecher Prof. Dr. Ingo Ebersberger
Ort Biologicum - Bio - 1.201 Seminarraum 1
Datum 13.06.2019 @ 09:18
Beschreibung Part I
Sequence Alignment
Sprecher Prof. Dr. Ingo Ebersberger
Ort Biologicum - Bio - 1.201 Seminarraum 1
Datum 06.06.2019 @ 09:15
Beschreibung Needleman-Wunsch, Smith-Waterman, MSA, Sum of Pairs Score, Progressive alignment strategy, ClustalW, MUSCLE
Splice-aware alignment for alternative splicing
Sprecher Stefan Simm
Ort Biologicum - Bio -1.203 (Hörsaal 2)
Datum 23.05.2019 @ 10:32
High-throughput Sequencing RNA-Seq and Applications
Sprecher Stefan SImm
Ort Biologicum - Bio -1.203 (Hörsaal 2)
Datum 23.05.2019 @ 09:15
Beschreibung NGS Workflow, rRNA depletion, Random hexamer priming, UMI
Next gen map / Burrows-Wheeler Transform
Sprecher Stefan Simm
Ort Biologicum - Bio - 1.201 Seminarraum 1
Datum 16.05.2019 @ 10:33
Beschreibung Part II
Mapping on reference genomes
Sprecher Stefan Simm
Ort Biologicum - Bio - 1.201 Seminarraum 1
Datum 16.05.2019 @ 09:13
Beschreibung Part I:
MAQ, Bowtie, NextGenMap, Suffix tree, Burrows Wheller
The assembly problem...
Untertitel Genome assembly, Different approaches to sequence assembly problem, Finding shortest superstring, de Bruijn graph based assemblers, Kmer coverage, Short read assembly with Velvet, Velvet: Error removal: Tips/Bubbles/Erroneous Connections (Chimera problem)
Sprecher Prof. Dr. Ingo Ebersberger
Ort Biologicum - Bio - 1.302 Seminarraum 3
Datum 14.05.2019 @ 11:00
Beschreibung ..., Molekularbiologischer Hintergrund, The problem with repeats: Breadcrumb algorithm
De novo genome assembly II
Sprecher Prof. Dr. Ingo Ebersberger
Ort Biologicum - Bio - 1.201 Seminarraum 1
Datum 02.05.2019 @ 10:44
Beschreibung Hamiltonian and Eulerian cycle, De Bruijn graph, K
